BiobaseTurner: Import Turner RNA parameters

[ bioinformatics, gpl, library ] [ Propose Tags ]

A data structure for Mathews / Turner RNA and DNA energy parameters. This library currently only provides an importer, not export functions. There are two reasons: (i) We currently have no use-case where we need more than import facilities (ii) The file structure is geared towards humans, not machines. If you need to be able to export, send a mail.

NOTE This is rather fragile as some files use different index enumerations, which we handle rather... simplistically.

In principle, all parameters should be symmetric regarding the stem direction. However, there is one asymmetry case in dnastack.dh. We do not fix this problem as we do not change the source files.


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Dependencies base (>3 && <5), BiobaseXNA (>=0.7), bytestring (>=0.9), bytestring-lexing (>=0.4), conduit (>=0.5), containers (>=0.4), filepath (>=1), lens (>=3.8), primitive (>=0.5), PrimitiveArray (>=0.5), repa (>=3.2), split (>=0.2), vector (>=0.10) [details]
License GPL-3.0-only
Copyright Christian Hoener zu Siederdissen, 2010-2013
Author Christian Hoener zu Siederdissen
Category Bioinformatics
Home page
Source repo head: git clone git://
Uploaded by ChristianHoener at 2013-04-25T00:42:45Z
Reverse Dependencies 4 direct, 0 indirect [details]
Downloads 11946 total (16 in the last 30 days)
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Status Docs uploaded by user
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