SelectSequencesFromMSA: Selects a representative subset of sequences from multiple sequence alignment.
SelectSequences is a tool for selection of a representative subset of sequences from a multiple sequence alignment in clustal format.
Optional Dependencies:
RNAz Installation via cabal-install:
cabal install SelectSequencesFromMSA
Downloads
- SelectSequencesFromMSA-1.0.5.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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| Versions [RSS] | 1.0.2, 1.0.3, 1.0.4, 1.0.5 |
|---|---|
| Dependencies | base (>=4.5 && <5), biocore, biofasta, bytestring, ClustalParser (>=1.2.3), cmdargs, containers, directory, either-unwrap, filepath, matrix, parsec, process, SelectSequencesFromMSA, text, text-metrics, transformers, vector, ViennaRNAParser (>=1.3.2) [details] |
| Tested with | ghc ==7.10.3, ghc ==8.2.2 |
| License | GPL-3.0-only |
| Author | Florian Eggenhofer |
| Maintainer | egg@informatik.uni.freiburg.de |
| Category | Bioinformatics |
| Source repo | head: git clone https://github.com/eggzilla/SelectSequencesFromMSA this: git clone https://github.com/eggzilla/SelectSequencesFromMSA/tree/1.0.5(tag 1.0.5) |
| Uploaded | by FlorianEggenhofer at 2018-03-12T18:16:38Z |
| Distributions | |
| Executables | SelectSequencesFromMSA |
| Downloads | 2823 total (13 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
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| Status | Docs available [build log] Last success reported on 2018-03-12 [all 1 reports] |