seqloc-datafiles: Read and write BED and GTF format genome annotations

[ bioinformatics, library, mit, program ] [ Propose Tags ]

Read and write BED and GTF format genome annotations

Versions [faq] 0.1, 0.1.1, 0.2, 0.2.1,, 0.2.2,,, 0.4, 0.4.2
Dependencies attoparsec (>=0.8.5), base (>=4.2 && <5), biocore, bytestring, hashable, haskell98, iteratee (>=0.8.1), monads-tf, QuickCheck, random, seqloc (>=0.3.1), transformers, unordered-containers [details]
License MIT
Author Nick Ingolia
Category Bioinformatics
Uploaded by NicholasIngolia at Fri Sep 30 18:49:02 UTC 2011
Distributions NixOS:0.4.2
Executables gtf-introns, test-bed, test-gtf, gtf-to-bed
Downloads 4879 total (254 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
All reported builds failed as of 2016-12-27 [all 7 reports]


  • Bio
    • SeqLoc
      • Bio.SeqLoc.Bed
      • Bio.SeqLoc.GTF
      • Bio.SeqLoc.TranscriptTable



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