seqloc-datafiles: Read and write BED and GTF format genome annotations

[ bioinformatics, library, mit, program ] [ Propose Tags ]

Read and write BED and GTF format genome annotations

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Versions [RSS] 0.1, 0.1.1, 0.2, 0.2.1, 0.2.1.1, 0.2.2, 0.2.2.1, 0.2.2.2, 0.4, 0.4.2
Dependencies attoparsec (>=0.8.5), base (>=4.2 && <5), biocore (>=0.2), bytestring, cmdtheline, conduit, conduit-extra, filepath, hashable, iteratee (>=0.8.1), lifted-base (>=0.2.3), monads-tf, pretty, QuickCheck, random, resourcet, seqloc (>=0.6), transformers, transformers-base (>=0.4.3), unordered-containers, vector [details]
License MIT
Author Nick Ingolia
Maintainer nick@ingolia.org
Category Bioinformatics
Home page http://www.ingolia-lab.org/seqloc-datafiles-tutorial.html
Source repo head: git clone http://github.com/ingolia/seqloc(seqloc-datafiles)
Uploaded by NicholasIngolia at 2014-11-24T08:49:43Z
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Reverse Dependencies 1 direct, 0 indirect [details]
Executables genome-to-trx, test-bed, test-gtf, bed-subregion, gtf-introns, bed-to-gtf, gtf-to-bed
Downloads 6948 total (30 in the last 30 days)
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Status Docs available [build log]
Last success reported on 2015-06-07 [all 1 reports]