sequence-formats: A package with basic parsing utilities for several Bioinformatic data formats.

[ bioinformatics, gpl, library ] [ Propose Tags ]

Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file formats used in population genetics analyses.


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Versions [RSS] [faq] 1.1.4.1, 1.3.1, 1.3.2, 1.3.2.1, 1.3.3, 1.4.0, 1.4.0.1, 1.4.1, 1.5.0, 1.5.1, 1.5.1.1, 1.5.1.2, 1.5.1.3, 1.5.1.4, 1.5.2, 1.6.0, 1.6.1
Change log Changelog.md
Dependencies attoparsec (>=0.13.2.4), base (>=4.7 && <5), bytestring (>=0.10.12.0), containers (>=0.6.2.1), errors (>=2.3.0), exceptions (>=0.10.4), foldl (>=1.4.10), lens-family (>=2.0.0), pipes (>=4.3.14), pipes-attoparsec (>=0.5.1.5), pipes-bytestring (>=2.1.6), pipes-safe (>=2.3.2), transformers (>=0.5.6.2), vector (>=0.12.1.2) [details]
License GPL-3.0-only
Author Stephan Schiffels
Maintainer stephan.schiffels@mac.com
Category Bioinformatics
Home page https://github.com/stschiff/sequence-formats
Bug tracker https://github.com/stschiff/sequence-formats/issues
Uploaded by stephan_schiffels at 2021-03-08T15:31:25Z
Distributions LTSHaskell:1.6.1, NixOS:1.6.1
Downloads 4102 total (38 in the last 30 days)
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Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2021-03-08 [all 1 reports]

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Readme for sequence-formats-1.6.1

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Sequence-Formats is a Haskell package to provide file parsers and writers for some commonly, and less commonly used file formats in Bioinformatics, speficially population genetics.

The library makes heavy use of the pipes library to provide Producers and Consumers for reading and writing files.