sequence-formats: A package with basic parsing utilities for several Bioinformatic data formats.

[ bioinformatics, gpl, library ] [ Propose Tags ]

Contains utilities to parse and write Eigenstrat, Fasta, FreqSum, VCF, Plink and other file formats used in population genetics analyses.

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Versions [faq], 1.3.1, 1.3.2,, 1.3.3, 1.4.0,, 1.4.1, 1.5.0, 1.5.1,,,,
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Dependencies attoparsec, base (>=4.7 && <5), bytestring, containers, errors, exceptions, foldl, lens-family, pipes, pipes-attoparsec, pipes-bytestring, pipes-safe, transformers, vector [details]
License GPL-3.0-only
Author Stephan Schiffels
Category Bioinformatics
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Uploaded by stephan_schiffels at 2020-10-07T17:13:47Z
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Downloads 3067 total (192 in the last 30 days)
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Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2020-10-07 [all 1 reports]


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Sequence-Formats is a Haskell package to provide file parsers and writers for some commonly, and less commonly used file formats in Bioinformatics, speficially population genetics.

The library makes heavy use of the pipes library to provide Producers and Consumers for reading and writing files.