varan: Process mpileup output to identify significant differences

[ bioinformatics, program ] [ Propose Tags ]

Using Agresti-Coull estimation of confidence interval, report variant positions found in pooled samples along with significance of the variant having different underlying allele frequency (+ for 95%, * for 99%).


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Versions [RSS] 0.3, 0.5, 0.5.1
Dependencies base (>=4 && <5), bytestring, cmdargs, mtl, parallel, random, statistics [details]
License LicenseRef-GPL
Author Ketil Malde
Maintainer Ketil Malde <>
Category Bioinformatics
Uploaded by KetilMalde at 2014-07-14T12:41:29Z
Reverse Dependencies 1 direct, 0 indirect [details]
Executables varan
Downloads 2289 total (7 in the last 30 days)
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Status Docs not available [build log]
Last success reported on 2016-12-14 [all 7 reports]