varan: Process mpileup output to identify significant differences
Using Agresti-Coull estimation of confidence interval, report
variant positions found in pooled samples along with significance of
the variant having different underlying allele frequency (+
for 95%,
*
for 99%).
Downloads
- varan-0.3.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
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Versions [RSS] | 0.3, 0.5, 0.5.1 |
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Dependencies | base (>=4 && <5), bytestring, cmdargs, mtl, parallel, random, statistics [details] |
License | LicenseRef-GPL |
Author | Ketil Malde |
Maintainer | Ketil Malde <ketil@malde.org> |
Category | Bioinformatics |
Uploaded | by KetilMalde at 2014-07-14T12:41:29Z |
Distributions | |
Reverse Dependencies | 1 direct, 0 indirect [details] |
Executables | varan |
Downloads | 2289 total (7 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
Your Rating | |
Status | Docs not available [build log] Last success reported on 2016-12-14 [all 7 reports] |