varan: Process mpileup output to identify significant differences

[ bioinformatics, program ] [ Propose Tags ]

Using Agresti-Coull estimation of confidence interval, report variant positions found in pooled samples along with significance of the variant having different underlying allele frequency (+ for 95%, * for 99%).


Maintainer's Corner

Package maintainers

For package maintainers and hackage trustees


  • No Candidates
Versions [RSS] 0.3, 0.5, 0.5.1
Dependencies ansi-terminal, base (>=4 && <5), bytestring, cmdargs, mtl, parallel, random, statistics [details]
License LicenseRef-GPL
Author Ketil Malde
Maintainer Ketil Malde <>
Category Bioinformatics
Uploaded by KetilMalde at 2014-11-26T12:05:23Z
Reverse Dependencies 1 direct, 0 indirect [details]
Executables sparks, vextr, varan
Downloads 2290 total (5 in the last 30 days)
Rating (no votes yet) [estimated by Bayesian average]
Your Rating
  • λ
  • λ
  • λ
Status Docs not available [build log]
Last success reported on 2016-12-12 [all 6 reports]