varan: Process mpileup output to identify significant differences

[ bioinformatics, program ] [ Propose Tags ]

Post-processing output from `samtools mpileup` to extract various information, including statistics (per-position or global), consensus sequence (in various formats), and textual visualizations.

Versions [RSS] [faq] 0.3, 0.5, 0.5.1
Dependencies ansi-terminal, base (==4.*), bytestring, cmdargs, mtl, parallel, random, statistics [details]
License LicenseRef-GPL
Author Ketil Malde
Maintainer Ketil Malde <>
Category Bioinformatics
Uploaded by KetilMalde at 2014-12-01T14:53:09Z
Distributions NixOS:0.5.1
Executables sparks, vextr, varan
Downloads 2121 total (15 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
Last success reported on 2016-12-12 [all 6 reports]


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