BiobaseBlast: BLAST-related tools

[ bioinformatics, gpl, library ] [ Propose Tags ]

This library contains BLAST-related functionality:

The matrices are currently not provided but can be found here: ftp://ftp.ncbi.nih.gov/blast/matrices/


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Versions [faq] 0.0.0.1, 0.2.0.0, 0.2.1.0, 0.3.0.0
Change log changelog.md
Dependencies aeson (>=1.0), attoparsec (>=0.13), base (>=4.7 && <5.0), binary (>=0.7), BiobaseENA (==0.0.0.*), BiobaseTypes (==0.2.0.*), BiobaseXNA (==0.11.0.*), bytestring, cereal (>=0.4), containers, deepseq (>=1.3), directory, file-embed (>=0.0.10), lens (>=4.0), log-domain (>=0.12), mtl (>=2.0), PrimitiveArray (==0.9.1.*), SciBaseTypes (==0.1.0.*), text, unordered-containers, vector (>=0.11), vector-th-unbox (>=0.2) [details]
License GPL-3.0-only
Copyright Christian Hoener zu Siederdissen, 2013 - 2019
Author Christian Hoener zu Siederdissen, Florian Eggenhofer
Maintainer choener@bioinf.uni-leipzig.de
Category Bioinformatics
Home page https://github.com/choener/BiobaseBlast
Bug tracker https://github.com/choener/BiobaseBlast/issues
Source repo head: git clone https://github.com/choener/BiobaseBlast
this: git clone https://github.com/choener/BiobaseBlast/tree/0.3.0.0(tag 0.3.0.0)
Uploaded by ChristianHoener at Fri Jun 14 16:17:28 UTC 2019
Distributions NixOS:0.3.0.0
Downloads 1713 total (62 in the last 30 days)
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Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2019-06-14 [all 1 reports]

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Readme for BiobaseBlast-0.3.0.0

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BiobaseBlast

This library contains BLAST-related functionality.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/