The BiobaseBlast package

[ Tags: bioinformatics, gpl, library ] [ Propose Tags ]

This library contains BLAST-related functionality:

The matrices are currently not provided but can be found here: ftp://ftp.ncbi.nih.gov/blast/matrices/


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Properties

Versions 0.0.0.1, 0.2.0.0, 0.2.1.0
Change log changelog.md
Dependencies aeson (>=1.0), attoparsec (>=0.13), base (>=4.7 && <5.0), binary (>=0.7), BiobaseTypes (==0.1.2.*), BiobaseXNA (==0.9.3.*), bytestring, cereal (>=0.4), containers, deepseq (>=1.3), directory, PrimitiveArray (==0.8.0.*), vector (>=0.10), vector-th-unbox (>=0.2) [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2013 - 2017
Author Christian Hoener zu Siederdissen, Florian Eggenhofer
Maintainer choener@bioinf.uni-leipzig.de
Category Bioinformatics
Home page https://github.com/choener/BiobaseBlast
Bug tracker https://github.com/choener/BiobaseBlast/issues
Source repository head: git clone https://github.com/choener/BiobaseBlast
this: git clone https://github.com/choener/BiobaseBlast/tree/0.2.1.0(tag 0.2.1.0)
Uploaded Thu Sep 28 14:59:55 UTC 2017 by ChristianHoener
Distributions NixOS:0.2.1.0
Downloads 660 total (36 in the last 30 days)
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Status Docs not available [build log]
Last success reported on 2017-09-28 [all 2 reports]
Hackage Matrix CI

Modules

  • Biobase
    • Biobase.BLAST
      • Biobase.BLAST.Import
      • Biobase.BLAST.Types
    • Biobase.SubstMatrix
      • Biobase.SubstMatrix.Import

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Readme for BiobaseBlast-0.2.1.0

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Build Status

BiobaseBlast

This library contains BLAST-related functionality.

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/