The BiobaseFasta package

[Tags: gpl, library, program]

Enumeratees for FASTA-handling and convenience functions. In a typical application, the user should write an enumeratee to extract information to allow for efficient low-memory handling of queries.

Facilities for fast, efficient linear scans are provided. These functions are not yet stable and could move to another library, if more data sources require efficient scans.

The library is, in general, in a preview state. In cases where you need to scan large FASTA files fast and with low memory overhead, the enumeratees should, however, already be useable enough.


Properties

Versions0.0.0.1, 0.0.0.2, 0.0.0.3, 0.0.0.4, 0.0.1.0
Dependenciesbase (>3 && <5), bytestring, iteratee, iteratee-compress, transformers
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2011
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/
Source repositoryhead: git clone git://github.com/choener/BiobaseFasta
ExecutablesTest
Upload dateMon Feb 27 00:35:00 UTC 2012
Uploaded byChristianHoener
Downloads609 total (94 in last 30 days)

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