BiobaseHTTP: Libary to interface with the Bioinformatics HTTP services - Entrez Ensembl

[ bioinformatics, gpl, library ] [ Propose Tags ]

BiobaseHTTP provides functions to interface the Bioinformatics REST services - Entrez Ensembl

NCBI Entrez provides multiple different databases and eutils.

For more information on Entrez refer to: http://www.ncbi.nlm.nih.gov/gquery/.

Information on the webservice can be found at: http://www.ncbi.nlm.nih.gov/books/NBK25497/. If you plan to include the library in a tool, register it as explained here.

Information on ENSEMBL genomes API can be found here: http://rest.ensemblgenomes.org/.

BiobaseHTTP is the successor of the deprecated EntrezHTTP library.


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Versions [faq] 1.1.0
Change log changelog
Dependencies aeson, base (>=4.5 && <5), BiobaseEnsembl, bytestring, conduit, either-unwrap, HTTP, http-conduit, hxt, mtl, network, Taxonomy (>=1.0.3), text, transformers [details]
License GPL-3.0-only
Copyright Florian Eggenhofer
Author Florian Eggenhofer
Maintainer egg@informatik.uni-freiburg.de
Category Bioinformatics
Home page https://github.com/eggzilla/BiobaseHTTP
Source repo head: git clone https://github.com/eggzilla/BiobaseHTTP
this: darcs get https://github.com/eggzilla/BiobaseHTTP/tree/1.1.0 --tag 1.1.0
Uploaded by FlorianEggenhofer at Wed Dec 12 21:50:15 UTC 2018
Distributions NixOS:1.1.0
Downloads 69 total (25 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
All reported builds failed as of 2018-12-12 [all 3 reports]

Modules

  • Biobase
    • Ensembl
      • Biobase.Ensembl.HTTP
    • Entrez
      • Biobase.Entrez.HTTP
      • Biobase.Entrez.HTTPData

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Readme for BiobaseHTTP-1.1.0

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BiobaseHTTP

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BiobaseHTTP provides functions to interface the Bioinformatics REST services - Entrez Ensembl.

NCBI Entrez provides multiple different databases and eutils.

For more information on Entrez refer to: Entrez.

Information on the webservice can be found at: NCBI books.

Information on ENSEMBL genomes API can be found here: Ensembl Genomes.

If you plan to include the library in a tool, register it as explained here.

BiobaseHTTP is the successor of the deprecated EntrezHTTP library.