BiobaseHTTP: Libary to interface with the Bioinformatics HTTP services - Entrez Ensembl

[ bioinformatics, gpl, library ] [ Propose Tags ]

BiobaseHTTP provides functions to interface the Bioinformatics REST services - Entrez Ensembl

NCBI Entrez provides multiple different databases and eutils.

For more information on Entrez refer to: http://www.ncbi.nlm.nih.gov/gquery/.

Information on the webservice can be found at: http://www.ncbi.nlm.nih.gov/books/NBK25497/. If you plan to include the library in a tool, register it as explained here.

Information on ENSEMBL genomes API can be found here: http://rest.ensemblgenomes.org/.

BiobaseHTTP is the successor of the deprecated EntrezHTTP library.


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Versions [faq] 1.1.0, 1.2.0
Change log ChangeLog.md
Dependencies aeson, base (>=4.5 && <5), BiobaseEnsembl, bytestring, conduit, either-unwrap, HTTP, http-conduit, hxt, mtl, network (<=2.8.0.0), Taxonomy (>=2.0.0), text, transformers [details]
License GPL-3.0-only
Copyright Florian Eggenhofer
Author Florian Eggenhofer
Maintainer egg@informatik.uni-freiburg.de
Category Bioinformatics
Home page https://github.com/eggzilla/BiobaseHTTP
Source repo head: git clone https://github.com/eggzilla/BiobaseHTTP
this: git clone https://github.com/eggzilla/BiobaseHTTP/tree/1.2.0(tag 1.2.0)
Uploaded by FlorianEggenhofer at 2019-11-20T21:19:53Z
Distributions NixOS:1.2.0
Downloads 834 total (4 in the last 30 days)
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Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2019-11-20 [all 1 reports]

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Readme for BiobaseHTTP-1.2.0

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BiobaseHTTP

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BiobaseHTTP provides functions to interface the Bioinformatics REST services - Entrez Ensembl.

NCBI Entrez provides multiple different databases and eutils.

For more information on Entrez refer to: Entrez.

Information on the webservice can be found at: NCBI books.

Information on ENSEMBL genomes API can be found here: Ensembl Genomes.

If you plan to include the library in a tool, register it as explained here.

BiobaseHTTP is the successor of the deprecated EntrezHTTP library.