biohazard: bioinformatics support library

[ bioinformatics, bsd3, library ] [ Propose Tags ]

This is a collection of modules I separated from various bioinformatics tools. The hope is to make them reusable and easier to maintain. Also includes some of these tools and a bunch that work on mitochondrial sequences.

Versions [faq] 0.6.1, 0.6.2, 0.6.3, 0.6.5, 0.6.6, 0.6.6.1, 0.6.9, 0.6.10, 0.6.13, 0.6.15, 0.6.16, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.1.0, 1.1.1, 2.0 (info)
Dependencies aeson (>=0.7 && <1.1), async (>=2.0 && <2.2), attoparsec (>=0.10 && <0.14), base (>=4.6 && <4.10), base-prelude (==1.0.*), binary (>=0.7 && <0.9), bytestring (>=0.10.2 && <0.11), bytestring-mmap (>=0.2 && <1.0), containers (>=0.4.1 && <0.6), directory (>=1.2 && <2.0), exceptions (>=0.6 && <0.9), filepath (>=1.3 && <2.0), hashable (>=1.0 && <1.3), iteratee (>=0.8.9.6 && <0.8.10), ListLike (>=3.0 && <5.0), primitive (>=0.5 && <0.7), random (>=1.0 && <1.2), scientific (==0.3.*), stm (==2.4.*), text (>=1.0 && <2.0), transformers (>=0.4.1 && <0.6), unix (>=2.5 && <2.8), unordered-containers (>=0.2.3 && <0.3), vector (==0.11.*), vector-algorithms (>=0.3 && <1.0), vector-th-unbox (==0.2.*), zlib (>=0.5 && <0.7) [details]
License BSD-3-Clause
Copyright (C) 2010-2017 Udo Stenzel
Author Udo Stenzel
Maintainer udo.stenzel@eva.mpg.de
Category Bioinformatics
Home page http://github.com/udo-stenzel/biohazard
Source repo head: git clone https://bitbucket.org/ustenzel/biohazard.git
Uploaded by ustenzel at Wed Jan 25 13:20:04 UTC 2017
Distributions NixOS:2.0
Downloads 5871 total (438 in the last 30 days)
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Status Hackage Matrix CI
Docs not available [build log]
All reported builds failed as of 2017-01-25 [all 3 reports]

Modules

  • Bio
    • Bio.Adna
    • Bio.Align
    • Bio.Bam
      • Bio.Bam.Evan
      • Bio.Bam.Fastq
      • Bio.Bam.Filter
      • Bio.Bam.Header
      • Bio.Bam.Index
      • Bio.Bam.Pileup
      • Bio.Bam.Reader
      • Bio.Bam.Rec
      • Bio.Bam.Regions
      • Bio.Bam.Rmdup
      • Bio.Bam.Trim
      • Bio.Bam.Writer
    • Bio.Base
    • Bio.Iteratee
      • Bio.Iteratee.Bgzf
      • Bio.Iteratee.Builder
      • Bio.Iteratee.ZLib
    • Bio.Prelude
    • Bio.PriorityQueue
    • Bio.TwoBit
    • Util
      • Bio.Util.Numeric
      • Bio.Util.Zlib
  • Paths_biohazard

Flags

NameDescriptionDefaultType
debug

enable additional sanity checks

DisabledManual

Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info

Downloads

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