biohazard: bioinformatics support library
This is a collection of modules I separated from various bioinformatics tools. The hope is to make them reusable and easier to maintain. Also includes some of these tools and a bunch that work on mitochondrial sequences.
Modules
- Bio
- Bio.Adna
- Bio.Align
- Bio.Bam
- Bio.Bam.Evan
- Bio.Bam.Fastq
- Bio.Bam.Filter
- Bio.Bam.Header
- Bio.Bam.Index
- Bio.Bam.Pileup
- Bio.Bam.Reader
- Bio.Bam.Rec
- Bio.Bam.Regions
- Bio.Bam.Rmdup
- Bio.Bam.Trim
- Bio.Bam.Writer
- Bio.Base
- Bio.Genocall
- Bio.Genocall.AvroFile
- Bio.Genocall.Metadata
- Bio.Iteratee
- Bio.Iteratee.Bgzf
- Bio.Iteratee.Builder
- Bio.Iteratee.ZLib
- Bio.PriorityQueue
- Bio.TwoBit
- Util
- Bio.Util.AD
- Bio.Util.AD2
- Bio.Util.Numeric
- Bio.Util.Regex
- Data
- Data.Avro
- Data.MiniFloat
Downloads
- biohazard-0.6.6.1.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Versions [RSS] | 0.6.1, 0.6.2, 0.6.3, 0.6.5, 0.6.6, 0.6.6.1, 0.6.9, 0.6.10, 0.6.13, 0.6.15, 0.6.16, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.1.0, 1.1.1, 2.0, 2.1 (info) |
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Dependencies | aeson (>=0.7 && <0.9), async (>=2.0 && <2.1), attoparsec (>=0.10 && <0.13), base (>=4.5 && <4.10), binary (>=0.7 && <0.9), biohazard, bytestring (>=0.10.2 && <0.11), bytestring-mmap (>=0.2 && <1.0), containers (>=0.4.1 && <0.6), deepseq (>=1.3 && <1.5), directory (>=1.2 && <2.0), exceptions (>=0.6 && <0.9), filepath (>=1.3 && <2.0), hashable (>=1.0 && <1.3), hmatrix (>=0.16 && <0.17), iteratee (>=0.8.9.6 && <0.8.10), ListLike (>=3.0 && <5.0), nonlinear-optimization (>=0.3 && <0.4), primitive (>=0.5 && <0.7), random (>=1.0 && <1.2), scientific (>=0.3 && <0.4), stm (>=2.4 && <2.5), strict (>=0.3 && <0.4), template-haskell (>=2 && <3), text (>=1.0 && <2.0), transformers (>=0.3 && <0.6), unix (>=2.5 && <2.8), unordered-containers (>=0.2.3 && <0.3), Vec (>=1 && <2), vector (>=0.9 && <0.11), vector-algorithms (>=0.3 && <1.0), vector-th-unbox (>=0.2 && <0.3), zlib (>=0.5 && <0.7) [details] |
License | BSD-3-Clause |
Copyright | (C) 2010-2016 Udo Stenzel |
Author | Udo Stenzel |
Maintainer | udo.stenzel@eva.mpg.de |
Category | Bioinformatics |
Home page | http://github.com/udo-stenzel/biohazard |
Source repo | head: git clone https://bitbucket.org/ustenzel/biohazard.git this: git clone https://bitbucket.org/ustenzel/biohazard.git(tag 0.6.6.1) |
Uploaded | by ustenzel at 2016-06-08T16:51:17Z |
Distributions | |
Reverse Dependencies | 1 direct, 0 indirect [details] |
Executables | mt-ccheck, mt-anno, jivebunny, fastq2bam, bam-trim, bam-rmdup, bam-rewrap, bam-resample, bam-meld, bam-fixpair, afroengineer, gt-scan, redeye-single, redeye-pileup, redeye-div, redeye-dar |
Downloads | 12451 total (43 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
Your Rating | |
Status | Docs not available [build log] All reported builds failed as of 2016-10-27 [all 3 reports] |