biohazard: bioinformatics support library

[ bioinformatics, bsd3, library ] [ Propose Tags ]

This is a collection of modules I separated from various bioinformatics tools. The hope is to make them reusable and easier to maintain. Also includes some of these tools and a bunch that work on mitochondrial sequences.

Versions [faq] 0.6.1, 0.6.2, 0.6.3, 0.6.5, 0.6.6, 0.6.6.1, 0.6.9, 0.6.10, 0.6.13, 0.6.15, 0.6.16, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.1.0, 1.1.1, 2.0 (info)
Dependencies aeson (>=0.7 && <0.9), async (==2.0.*), attoparsec (>=0.10 && <0.13), base (>=4.5 && <4.10), binary (>=0.7 && <0.9), biohazard, bytestring (>=0.10.2 && <0.11), bytestring-mmap (>=0.2 && <1.0), containers (>=0.4.1 && <0.6), deepseq (>=1.3 && <1.5), directory (>=1.2 && <2.0), exceptions (>=0.6 && <0.9), filepath (>=1.3 && <2.0), hashable (>=1.0 && <1.3), hmatrix (==0.16.*), iteratee (>=0.8.9.6 && <0.8.10), ListLike (>=3.0 && <5.0), nonlinear-optimization (==0.3.*), primitive (>=0.5 && <0.7), random (>=1.0 && <1.2), scientific (==0.3.*), stm (==2.4.*), strict (==0.3.*), template-haskell (==2.*), text (>=1.0 && <2.0), transformers (>=0.3 && <0.6), unix (>=2.5 && <2.8), unordered-containers (>=0.2.3 && <0.3), Vec (==1.*), vector (>=0.9 && <0.11), vector-algorithms (>=0.3 && <1.0), vector-th-unbox (==0.2.*), zlib (>=0.5 && <0.7) [details]
License BSD-3-Clause
Copyright (C) 2010-2015 Udo Stenzel
Author Udo Stenzel
Maintainer udo.stenzel@eva.mpg.de
Category Bioinformatics
Home page http://github.com/udo-stenzel/biohazard
Source repo head: git clone git://github.com/udo-stenzel/biohazard.git
this: git clone git://github.com/udo-stenzel/biohazard.git(tag 0.6.5)
Uploaded by ustenzel at Tue May 3 14:38:24 UTC 2016
Distributions NixOS:2.0
Executables mt-ccheck, mt-anno, jivebunny, fastq2bam, bam-trim, bam-rmdup, bam-rewrap, bam-resample, bam-meld, bam-fixpair, afroengineer, gt-scan, redeye-single, redeye-pileup, redeye-div, redeye-dar
Downloads 5874 total (423 in the last 30 days)
Rating (no votes yet) [estimated by rule of succession]
Your Rating
  • λ
  • λ
  • λ
Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2016-05-03 [all 1 reports]

Modules

[Index]

Downloads

Maintainer's Corner

For package maintainers and hackage trustees