biohazard: bioinformatics support library
This is a collection of modules I separated from various bioinformatics tools. The hope is to make them reusable and easier to maintain. Also includes some of these tools and a bunch that work on mitochondrial sequences.
Modules
[Index]
Downloads
- biohazard-0.6.5.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
| Versions [RSS] | 0.6.1, 0.6.2, 0.6.3, 0.6.5, 0.6.6, 0.6.6.1, 0.6.9, 0.6.10, 0.6.13, 0.6.15, 0.6.16, 1.0.0, 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.1.0, 1.1.1, 2.0, 2.1 (info) |
|---|---|
| Dependencies | aeson (>=0.7 && <0.9), async (>=2.0 && <2.1), attoparsec (>=0.10 && <0.13), base (>=4.5 && <4.10), binary (>=0.7 && <0.9), biohazard, bytestring (>=0.10.2 && <0.11), bytestring-mmap (>=0.2 && <1.0), containers (>=0.4.1 && <0.6), deepseq (>=1.3 && <1.5), directory (>=1.2 && <2.0), exceptions (>=0.6 && <0.9), filepath (>=1.3 && <2.0), hashable (>=1.0 && <1.3), hmatrix (>=0.16 && <0.17), iteratee (>=0.8.9.6 && <0.8.10), ListLike (>=3.0 && <5.0), nonlinear-optimization (>=0.3 && <0.4), primitive (>=0.5 && <0.7), random (>=1.0 && <1.2), scientific (>=0.3 && <0.4), stm (>=2.4 && <2.5), strict (>=0.3 && <0.4), template-haskell (>=2 && <3), text (>=1.0 && <2.0), transformers (>=0.3 && <0.6), unix (>=2.5 && <2.8), unordered-containers (>=0.2.3 && <0.3), Vec (>=1 && <2), vector (>=0.9 && <0.11), vector-algorithms (>=0.3 && <1.0), vector-th-unbox (>=0.2 && <0.3), zlib (>=0.5 && <0.7) [details] |
| Tested with | ghc ==7.4.2, ghc ==7.6.3, ghc ==7.8.4, ghc ==7.10.3, ghc ==8.0.1 |
| License | BSD-3-Clause |
| Copyright | (C) 2010-2015 Udo Stenzel |
| Author | Udo Stenzel |
| Maintainer | udo.stenzel@eva.mpg.de |
| Category | Bioinformatics |
| Home page | http://github.com/udo-stenzel/biohazard |
| Source repo | head: git clone git://github.com/udo-stenzel/biohazard.git this: git clone git://github.com/udo-stenzel/biohazard.git(tag 0.6.5) |
| Uploaded | by ustenzel at 2016-05-03T14:38:24Z |
| Distributions | |
| Reverse Dependencies | 1 direct, 0 indirect [details] |
| Executables | mt-ccheck, mt-anno, jivebunny, fastq2bam, bam-trim, bam-rmdup, bam-rewrap, bam-resample, bam-meld, bam-fixpair, afroengineer, gt-scan, redeye-single, redeye-pileup, redeye-div, redeye-dar |
| Downloads | 12475 total (54 in the last 30 days) |
| Rating | (no votes yet) [estimated by Bayesian average] |
| Your Rating | |
| Status | Docs available [build log] Last success reported on 2016-05-03 [all 1 reports] |