cmv: Detailed visualization of CMs, HMMs and their comparisions
cmv is a collection of tools for the visualisation of Hidden Markov Models (HMMV) and RNA-family models (CMV). Moreover it can visualise comparisons of these models (HMMCV,CMCV), and annotate linked regions in the structural alignments they were constructed from and via, 3rd party tools, in their consensus secondary structure.
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- cmv-1.0.7.tar.gz [browse] (Cabal source package)
- Package description (as included in the package)
Maintainer's Corner
For package maintainers and hackage trustees
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Versions [RSS] | 1.0.1, 1.0.2, 1.0.3, 1.0.4, 1.0.5, 1.0.6, 1.0.7, 1.0.8 |
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Change log | changelog |
Dependencies | aeson, base (>=4.5 && <5), BiobaseInfernal (==0.8.1.0), BiobaseTypes, BiobaseXNA, BioHMM (>=1.2.0), bytestring, cmdargs, cmv, colour, containers, diagrams-cairo, diagrams-core, diagrams-lib (>=1.4.1.2), directory, either-unwrap, filepath, mtl, parsec (>=3.1.9), ParsecTools, PrimitiveArray, StockholmAlignment (>=1.1.2), SVGFonts (>=1.6.0.2), template-haskell, text, vector [details] |
License | GPL-3.0-only |
Author | Florian Eggenhofer |
Maintainer | egg@informatik.uni-freiburg.de |
Category | Bioinformatics |
Source repo | head: git clone https://github.com/eggzilla/cmv this: git clone https://github.com/eggzilla/cmv/tree/1.0.7(tag 1.0.7) |
Uploaded | by FlorianEggenhofer at 2018-01-15T15:20:02Z |
Distributions | |
Executables | HMMV, HMMCV, CMVJson, HMMCtoCMC, CMCtoHMMC, CMCWStoCMCV, CMV, CMCV |
Downloads | 5121 total (24 in the last 30 days) |
Rating | (no votes yet) [estimated by Bayesian average] |
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Status | Docs available [build log] Last success reported on 2018-01-15 [all 1 reports] |