diversity: Return the diversity at each position for all sequences in a fasta file

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag.

Versions [faq] 0.2.0.5, 0.3.0.0, 0.3.4.0, 0.3.4.1, 0.3.5.0, 0.3.5.1, 0.4.0.0, 0.4.0.1, 0.4.0.2, 0.5.0.0, 0.5.0.2, 0.6.0.0, 0.6.0.1, 0.6.0.2, 0.6.2.0, 0.6.2.1, 0.6.3.0, 0.7.0.0, 0.7.0.1, 0.7.0.3, 0.7.1.0, 0.7.1.1, 0.8.0.0, 0.8.0.1, 0.8.0.2, 0.8.1.0 (info)
Dependencies base (>=4.6 && <4.8), containers (==0.5.*), diversity, fasta (>=0.5.1.3 && <0.6), math-functions (==0.1.*), optparse-applicative (>=0.10 && <0.12), parsec (>=3.1 && <4.0), split (==0.2.*) [details]
License GPL-2.0-only
Author Gregory W. Schwartz
Maintainer gregory.schwartz@drexel.edu
Category Bioinformatics
Home page https://github.com/GregorySchwartz/diversity
Uploaded by GregorySchwartz at Mon Mar 2 18:22:30 UTC 2015
Distributions NixOS:0.8.1.0
Executables diversity
Downloads 9736 total (182 in the last 30 days)
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Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2015-03-02 [all 1 reports]

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