diversity: Return the diversity at each position for all sequences in a fasta file

[ bioinformatics, gpl, library, program ] [ Propose Tags ]

Find the diversity of a collection of entities, mainly for use with fasta sequences. Produces a binary which works on fasta files to find the diversity of any order and rarefaction curves for a sliding window across all positions in the sequences. To analyze just a collection of entities, just use the whole sequences and list flag.

Versions [faq],,,,,,,,,,,,,,,,,,,,,,,,, (info)
Dependencies base (>=4.6 && <4.9), containers (==0.5.*), data-ordlist (==0.4.*), diversity, fasta (==0.7.*), math-functions (==0.1.*), MonadRandom (==0.3.*), optparse-applicative (>=0.10 && <0.12), parsec (>=3.1 && <4.0), pipes (==4.1.*), random-shuffle (==0.0.*), scientific (==0.3.*), split (==0.2.*) [details]
License GPL-2.0-only
Author Gregory W. Schwartz
Maintainer gregory.schwartz@drexel.edu
Category Bioinformatics
Home page https://github.com/GregorySchwartz/diversity
Uploaded by GregorySchwartz at Mon May 18 19:18:14 UTC 2015
Distributions NixOS:
Executables diversity
Downloads 9980 total (423 in the last 30 days)
Rating (no votes yet) [estimated by rule of succession]
Your Rating
  • λ
  • λ
  • λ
Status Hackage Matrix CI
Docs available [build log]
Last success reported on 2015-05-23 [all 1 reports]




Maintainer's Corner

For package maintainers and hackage trustees