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BiobaseTypes: Collection of types for bioinformatics

[ bioinformatics, bsd3, data-structures, library ] [ Propose Tags ]

Types used in a number of bioinformatics libraries.

  • linear indices

  • energies

  • numerics

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Versions [RSS] 0.0.2.1, 0.0.2.2, 0.1.1.0, 0.1.1.1, 0.1.2.0, 0.1.2.1, 0.1.3.0, 0.1.4.0, 0.2.0.0, 0.2.0.1, 0.2.1.0
Change log changelog.md
Dependencies aeson (>=0.8 && <0.11), base (>=4.7 && <4.9), binary (>=0.7 && <0.8), cereal (>=0.4 && <0.6), cereal-text (>=0.1 && <0.2), data-default (>=0.5 && <0.6), deepseq (>=1.3 && <1.5), hashable (>=1.2 && <1.3), log-domain (>=0.10 && <0.11), primitive (>=0.5 && <0.7), PrimitiveArray (>=0.6.0 && <0.7.1), QuickCheck (>=2.7 && <2.9), stringable (>=0.1.3 && <0.2), text (>=1.0 && <1.3), text-binary (>=0.2 && <0.3), vector (>=0.10 && <0.12), vector-binary-instances (>=0.2 && <0.3), vector-th-unbox (>=0.2 && <0.3) [details]
License BSD-3-Clause
Copyright Christian Hoener zu Siederdissen, 2015
Author Christian Hoener zu Siederdissen, 2015
Maintainer choener@bioinf.uni-leipzig.de
Category Data Structures, Bioinformatics
Home page https://github.com/choener/BiobaseTypes
Bug tracker https://github.com/choener/BiobaseTypes/issues
Source repo head: git clone git://github.com/choener/BiobaseTypes
Uploaded by ChristianHoener at 2015-11-22T15:41:41Z
Distributions
Reverse Dependencies 12 direct, 11 indirect [details]
Downloads 8433 total (42 in the last 30 days)
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Status Docs available [build log]
Last success reported on 2015-12-05 [all 3 reports]

Readme for BiobaseTypes-0.1.1.1

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BiobaseTypes

A bunch of types in use in different modules:

  • numerical small and large numbers
  • Gibbs free energy change
  • phantom-typed linear indices: these encode the (rather annoying) habit of computational biology of having both 0-based and 1-based data

Contact

Christian Hoener zu Siederdissen
Leipzig University, Leipzig, Germany
choener@bioinf.uni-leipzig.de
http://www.bioinf.uni-leipzig.de/~choener/