The flowsim package

[Tags: gpl, program]

Provides clonesim, a clone simulator that simulates shotgun genomic clones, and flowsim, that takes the output from clonesim (or any other Fasta-formatted file) and generates simulated reads from them mimicing Roche's 454 pyrosequencing technology, writing output in 454's native SFF format. The flowgram generation is based on empirical distributions derived from real data (although analytic distributions are available too, if you prefer).

The Darcs repository is at


Versions0.2.6, 0.2.7, 0.2.8, 0.3, 0.3.3, 0.3.4, 0.3.5
Change logNone available
Dependenciesarray (>=0.1), base (==4.*), biocore (>=0.3), biofasta, biosff (>=0.3), bytestring, cmdargs (>=0.5), containers, directory, MonadRandom, mtl (>=2), random [details]
AuthorKetil Malde
MaintainerKetil Malde <>
Home page
Executablesfiltersff, gelfilter, duplicator, mutator, kitsim, clonesim, hplc, flowsim
UploadedTue Nov 19 15:49:01 UTC 2013 by KetilMalde
Downloads1315 total (55 in last 30 days)
0 []
StatusDocs not available [build log]
Last success reported on 2015-05-19 [all 4 reports]


Maintainers' corner

For package maintainers and hackage trustees