The BiobaseInfernal package

[Tags: gpl, library]

Provides import and export facilities for Infernal/Rfam data formats. We include Stockholm, CM, verbose Infernal results, and tabulated Infernal results. Some small tools are included.

The VerboseHit format is slightly extended to allow simple annotations. This extension should be backward-compatible with standard-compliant parsers.

This package uses Int's to store sequence position information. Don't compile for 32bit. (And yes, this is a TODO, to change to Int64).

Changes in 0.6.0.1

Changes in 0.6.0.0


Properties

Versions0.0.2.0, 0.0.2.1, 0.5.0.0, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.3.1, 0.5.4.0, 0.5.4.1, 0.6.0.0, 0.6.0.1, 0.6.2.0, 0.7.0.0, 0.7.0.1, 0.7.1.0
Dependenciesattoparsec, attoparsec-iteratee, base (>3 && <5), biocore, bytestring, containers, either-unwrap, iteratee, iteratee-compress, PrimitiveArray, transformers, tuple, vector
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2011
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/
Upload dateThu Dec 1 20:40:08 UTC 2011
Uploaded byChristianHoener
Downloads1308 total (96 in last 30 days)

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