The samtools package

[ Tags: bioinformatics, library, mit ] [ Propose Tags ]

Binding to the C samtools library, which reads and writes SAM format alignments, both binary and tab- delimited text formats. It also supports rapid access to specific alignments in a sorted BAM file and access to sequences from indexed Fasta files.


Versions 0.1, 0.1.1, 0.1.2, 0.1.3, 0.2,, 0.2.1,,, 0.2.2, 0.2.3, 0.2.4,,,
Dependencies base (>=4.3 && <5), bytestring, filepath, haskell98, process, seqloc, vector (>=0.7) [details]
License MIT
Author Nicholas Ingolia
Category Bio
Home page
Uploaded Fri Apr 1 16:47:45 UTC 2011 by NicholasIngolia
Distributions NixOS:
Executables samtest
Downloads 3766 total (346 in the last 30 days)
Rating (no votes yet) [estimated by rule of succession]
Your Rating
  • λ
  • λ
  • λ
Status Docs not available [build log]
All reported builds failed as of 2016-12-28 [all 7 reports]
Hackage Matrix CI


  • Bio
    • SamTools
      • Bio.SamTools.Bam
      • Bio.SamTools.BamIndex
      • Bio.SamTools.Cigar
      • Bio.SamTools.FaIdx



Build test program


Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info


Maintainer's Corner

For package maintainers and hackage trustees