The samtools package
Binding to the C samtools library, which reads and writes SAM format alignments, both binary and tab- delimited text formats. It also supports rapid access to specific alignments in a sorted BAM file and access to sequences from indexed Fasta files.
Properties
| Versions | 0.1, 0.1.1, 0.1.2, 0.1.3, 0.2, 0.2.0.1, 0.2.1, 0.2.1.1, 0.2.1.2 |
|---|---|
| Dependencies | base (≥4.2 & <5), bytestring, filepath, haskell98, process, seqloc (≥0.3.1), vector (≥0.7) |
| License | MIT |
| Author | Nicholas Ingolia |
| Maintainer | nick@ingolia.org |
| Category | Bioinformatics |
| Home page | http://www.ingolia-lab.org/software/samtools/ |
| Executables | samtest |
| Upload date | Fri Sep 30 19:48:16 UTC 2011 |
| Uploaded by | NicholasIngolia |
| Build failure | ghc-7.2 (log) |
Modules
- Bio
- SamTools
- Bio.SamTools.Bam
- Bio.SamTools.BamIndex
- Bio.SamTools.Cigar
- Bio.SamTools.FaIdx
- SamTools
Downloads
- samtools-0.2.tar.gz (Cabal source package)
- package description (included in the package)