The samtools package

[Tags: library, mit]

Binding to the C samtools library, which reads and writes SAM format alignments, both binary and tab- delimited text formats. It also supports rapid access to specific alignments in a sorted BAM file and access to sequences from indexed Fasta files.


Properties

Versions0.1, 0.1.1, 0.1.2, 0.1.3, 0.2, 0.2.0.1, 0.2.1, 0.2.1.1, 0.2.1.2, 0.2.2, 0.2.3, 0.2.4, 0.2.4.1
Dependenciesbase (>=4.2 && <5), bytestring, filepath, process, seqloc (>=0.3.1), vector (>=0.7)
LicenseMIT
AuthorNicholas Ingolia
Maintainernick@ingolia.org
CategoryBioinformatics
Home pagehttp://www.ingolia-lab.org/software/samtools/
Executablessamtest
UploadedSat Oct 1 16:09:09 UTC 2011 by NicholasIngolia
Downloads1160 total (125 in last 30 days)
StatusDocs uploaded by user
Build status unknown [no reports yet]

Modules

[Index]

Flags

NameDescriptionDefault
testsBuild test programDisabled

Use -f <flag> to enable a flag, or -f -<flag> to disable that flag. More info

Downloads

Maintainers' corner

For package maintainers and hackage trustees