The samtools package
Binding to the C samtools library, which reads and writes SAM format alignments, both binary and tab- delimited text formats. It also supports rapid access to specific alignments in a sorted BAM file and access to sequences from indexed Fasta files.
Properties
| Versions | 0.1, 0.1.1, 0.1.2, 0.1.3, 0.2, 0.2.0.1, 0.2.1, 0.2.1.1, 0.2.1.2 |
|---|---|
| Dependencies | base (≥4.2 & <5), bytestring, filepath, process, seqloc (≥0.3.1), vector (≥0.7) |
| License | MIT |
| Author | Nicholas Ingolia |
| Maintainer | nick@ingolia.org |
| Category | Bioinformatics |
| Home page | http://www.ingolia-lab.org/samtools-tutorial.html |
| Source repository | git clone http://github.com/ingolia/samtools |
| Executables | samtest |
| Upload date | Sun Jun 17 03:07:52 UTC 2012 |
| Uploaded by | NicholasIngolia |
| Built on | ghc-7.4 |
Modules
Downloads
- samtools-0.2.1.2.tar.gz (Cabal source package)
- package description (included in the package)