The samtools package

[ Tags: bioinformatics, library, mit ] [ Propose Tags ]

Binding to the C samtools library, which reads and writes SAM format alignments, both binary and tab- delimited text formats. It also supports rapid access to specific alignments in a sorted BAM file and access to sequences from indexed Fasta files.

Properties

Versions 0.1, 0.1.1, 0.1.2, 0.1.3, 0.2, 0.2.0.1, 0.2.1, 0.2.1.1, 0.2.1.2, 0.2.2, 0.2.3, 0.2.4, 0.2.4.1, 0.2.4.2, 0.2.4.3
Dependencies base (>=4.2 && <5), bytestring, filepath, process, seqloc (>=0.3.1), vector (>=0.7) [details]
License MIT
Author Nicholas Ingolia
Maintainer nick@ingolia.org
Category Bioinformatics
Home page http://www.ingolia-lab.org/samtools-tutorial.html
Source repository head: git clone http://github.com/ingolia/samtools(samtools)
Uploaded Wed May 7 01:52:46 UTC 2014 by NicholasIngolia
Distributions NixOS:0.2.4.3
Executables samtest
Downloads 3399 total (40 in the last 30 days)
Rating 0.0 (0 ratings) [clear rating]
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Status Docs available [build log]
Successful builds reported [all 1 reports]
Hackage Matrix CI

Modules

[Index]

Flags

NameDescriptionDefaultType
tests

Build test program

DisabledAutomatic

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