The Biobase package

[Tags:gpl, library]

Base library for bioinformatics providing the following features:

RNA sequences and energy files:

Utility classes:

Bioinformatics data sources:

Important notes:

Properties

Versions 0.0.2.0, 0.0.2.1, 0.1.0.0, 0.1.0.1, 0.3.1.0, 0.3.1.1
Dependencies array, base (==4.*), bytestring, containers, deepseq, directory (>=1), either-unwrap, file-embed (>=0.0.3), filemanip (>=0.3.3 && <0.4), filepath, ghc-prim, HsTools (>=0.0.1.1 && <0.0.2), mtl, parsec (==3.*), ParsecTools (==0.0.2.*), primitive (==0.3.*), PrimitiveArray (>=0.0.3.1 && <0.0.4), split (>=0.1.2.3), tuple (>=0.2.0.1), utility-ht, vector (==0.7.*), vector-read-instances, zlib [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2010,2011
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Stability experimental
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Uploaded Fri Apr 8 12:46:37 UTC 2011 by ChristianHoener
Distributions NixOS:0.3.1.1
Downloads 1873 total (13 in the last 30 days)
Votes
0 []
Status Docs not available [build log]
All reported builds failed as of 2015-12-05 [all 5 reports]

Modules

  • Biobase
    • Biobase.Constants
    • DataSource
      • Biobase.DataSource.CT
        • Biobase.DataSource.CT.Import
      • Biobase.DataSource.DotParen
        • Biobase.DataSource.DotParen.Import
      • Biobase.DataSource.FR3D
        • Biobase.DataSource.FR3D.Import
      • Biobase.DataSource.InfernalCM
        • Biobase.DataSource.InfernalCM.Export
        • Biobase.DataSource.InfernalCM.Import
      • Biobase.DataSource.MCFold
        • Biobase.DataSource.MCFold.Conversions
        • Biobase.DataSource.MCFold.Import
      • Biobase.DataSource.Mafft
        • Biobase.DataSource.Mafft.Import
      • Biobase.DataSource.Turner
        • Biobase.DataSource.Turner.Import
        • Biobase.DataSource.Turner.Tables
      • Biobase.DataSource.Vienna
        • Biobase.DataSource.Vienna.Default
        • Export
          • Biobase.DataSource.Vienna.Export.ViennaC
          • Biobase.DataSource.Vienna.Export.ViennaPar
        • Import
          • Biobase.DataSource.Vienna.Import.Turner
          • Biobase.DataSource.Vienna.Import.ViennaPar
        • Modification
          • Biobase.DataSource.Vienna.Modification.NonStandard
          • Biobase.DataSource.Vienna.Modification.Partition
          • Biobase.DataSource.Vienna.Modification.Temperature
    • Biobase.RNA
      • Biobase.RNA.Complex
      • Biobase.RNA.Hashes
      • Biobase.RNA.NucBounds
      • Biobase.RNA.Pairs
      • Biobase.RNA.ViennaPair
    • Biobase.ScoreTypes
    • Biobase.Structure
      • Biobase.Structure.Constraint
      • Biobase.Structure.Shapes
    • Types
      • Biobase.Types.Convert
      • Biobase.Types.Energy
      • Biobase.Types.Partition
      • Biobase.Types.Ring
      • Biobase.Types.Score

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