The BiobaseXNA package
This is a base library for bioinformatics with emphasis on RNA and DNA primary structure and related tools. Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.
Contains data from:
Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)
doi:10.1093nargkp011
Changes since 0.5.4.0
tuple-like updating (updL, updR, updP, updT)
baseP pair selection
isostericity data, loaded from csv files
Changes since 0.5.3.0
tuple-like (selN) selection of basepairing elements (baseL,baseR,baseT)
Changes since 0.5.1.0
bonusTable for constrained folding
Properties
| Versions | 0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1 |
|---|---|
| Dependencies | base (>3 & <5), bytestring, containers, csv, file-embed, primitive, PrimitiveArray, text, tuple, vector (0.9.*) |
| License | GPL-3 |
| Copyright | Christian Hoener zu Siederdissen, 2011 |
| Author | Christian Hoener zu Siederdissen |
| Maintainer | choener@tbi.univie.ac.at |
| Stability | experimental |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/~choener/ |
| Upload date | Fri Oct 14 13:03:39 UTC 2011 |
| Uploaded by | ChristianHoener |
| Built on | ghc-7.2 |
Modules
Downloads
- BiobaseXNA-0.5.5.0.tar.gz (Cabal source package)
- package description (included in the package)