The BiobaseXNA package

[ Tags: bioinformatics, gpl, library, program ] [ Propose Tags ]

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure and related tools. Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs

Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis

Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011

New in 0.6.2.0

Properties

Versions 0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0, 0.9.1.0, 0.9.1.1, 0.9.2.0, 0.9.2.1, 0.9.3.0, 0.9.3.1, 0.10.0.0 (info)
Dependencies base (>3 && <5), bytestring, containers, csv, file-embed, primitive, PrimitiveArray (==0.2.0.0), text, tuple, vector (==0.9.*) [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011-2012
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Source repository head: git clone git://github.com/choener/BiobaseXNA
Uploaded Thu Feb 16 14:07:47 UTC 2012 by ChristianHoener
Distributions NixOS:0.10.0.0
Downloads 9464 total (720 in the last 30 days)
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