The BiobaseXNA package

[Tags: gpl, library, program]

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure and related tools. Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs

Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis

Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011

New in 0.6.2.0


Properties

Versions0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0
Dependenciesbase (>3 && <5), bytestring (>=0.9), containers (>=0.4), csv (==0.1.2), file-embed (>=0.0.4.1), primitive (>=0.4.1), PrimitiveArray (==0.2.2.0), text (>=0.11), tuple (>=0.2), vector (==0.9.*)
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2011-2012
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/
Source repositoryhead: git clone git://github.com/choener/BiobaseXNA
Upload dateSun Jul 8 01:10:44 UTC 2012
Uploaded byChristianHoener
Downloads2041 total (196 in last 30 days)

Modules

[Index]

Downloads

Maintainers' corner

For package maintainers and hackage trustees