BiobaseXNA: Efficient RNA/DNA representations

[ bioinformatics, gpl, library, program ] [ Propose Tags ]
Versions,,,,,,,,,,,,,,,,,,,,,,,,,,,,,, (info)
Dependencies base (>3 && <5), bytestring (>=0.9), containers (>=0.4), csv (==0.1.2), file‑embed (>=0.0.4), primitive (>=0.4), PrimitiveArray (>=, text (>=0.11), tuple (>=0.2), vector (>=0.10) [details]
License GPL-3.0-only
Copyright Christian Hoener zu Siederdissen, 2011-2012
Author Christian Hoener zu Siederdissen
Category Bioinformatics
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Source repo head: git clone git://
Uploaded by ChristianHoener at Thu Nov 22 14:31:31 UTC 2012
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This is a base library for bioinformatics with emphasis on RNA and DNA primary structure and related tools. Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs

Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis

Nucl. Acids Res. (2009)

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