The BiobaseXNA package
This is a base library for bioinformatics with emphasis on RNA and DNA primary structure and related tools. Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.
Contains data from:
Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)
http://dx.crossref.org/10.1093%2Fnar%2Fgkp011
New in 0.6.2.0
Updated to PrimitiveArray >= 0.2.0.0
Properties
| Versions | 0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1 |
|---|---|
| Dependencies | base (>3 & <5), bytestring (≥0.9), containers (≥0.4), csv (0.1.2), file-embed (≥0.0.4), primitive (≥0.4), PrimitiveArray (≥0.4.0.1), text (≥0.11), tuple (≥0.2), vector (≥0.10) |
| License | GPL-3 |
| Copyright | Christian Hoener zu Siederdissen, 2011-2012 |
| Author | Christian Hoener zu Siederdissen |
| Maintainer | choener@tbi.univie.ac.at |
| Stability | experimental |
| Category | Bioinformatics |
| Home page | http://www.tbi.univie.ac.at/~choener/ |
| Source repository | git clone git://github.com/choener/BiobaseXNA |
| Upload date | Thu Nov 22 14:31:31 UTC 2012 |
| Uploaded by | ChristianHoener |
| Built on | ghc-7.6 |
Modules
Downloads
- BiobaseXNA-0.6.3.1.tar.gz (Cabal source package)
- package description (included in the package)