The BiobaseXNA package

[Tags: gpl, library, program]

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure.

Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs

Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis

Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011

new in 0.7

new in 0.6.2.0


Properties

Versions0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0
Dependenciesbase (>3 && <5), bytestring (>=0.10), cmdargs (>=0.10), containers (>=0.4), csv (==0.1.2), file-embed (>=0.0.4.7), primitive (>=0.5), PrimitiveArray (>=0.5), repa (>=3.2), text (>=0.11), tuple (>=0.2), vector (>=0.10)
LicenseGPL-3
CopyrightChristian Hoener zu Siederdissen, 2011-2013
AuthorChristian Hoener zu Siederdissen
Maintainerchoener@tbi.univie.ac.at
Stabilityexperimental
CategoryBioinformatics
Home pagehttp://www.tbi.univie.ac.at/~choener/
Source repositoryhead: git clone git://github.com/choener/BiobaseXNA
ExecutablesSubOptDistance
UploadedTue Apr 30 21:14:47 UTC 2013 by ChristianHoener
Downloads3367 total (128 in last 30 days)
StatusDocs uploaded by user
Build status unknown [no reports yet]

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