The BiobaseXNA package

[ Tags: bioinformatics, gpl, library, program ] [ Propose Tags ]

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure.

Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs

Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis

Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011

new in 0.7

new in 0.6.2.0

Properties

Versions 0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0, 0.9.1.0, 0.9.1.1, 0.9.2.0, 0.9.2.1, 0.9.3.0, 0.9.3.1 (info)
Dependencies base (>3 && <5), bytestring (>=0.10), cmdargs (>=0.10), containers (>=0.4), csv (==0.1.2), file-embed (>=0.0.4.7), primitive (>=0.5), PrimitiveArray (>=0.5), repa (>=3.2), text (>=0.11), tuple (>=0.2), vector (>=0.10) [details]
License GPL-3
Copyright Christian Hoener zu Siederdissen, 2011-2013
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Source repository head: git clone git://github.com/choener/BiobaseXNA
Uploaded Tue Apr 30 21:14:47 UTC 2013 by ChristianHoener
Distributions NixOS:0.9.3.1
Executables SubOptDistance
Downloads 8444 total (196 in the last 30 days)
Rating 0.0 (0 ratings) [clear rating]
  • λ
  • λ
  • λ
Status Docs uploaded by user
Build status unknown [no reports yet]
Hackage Matrix CI

Modules

[Index]

Downloads

Maintainer's Corner

For package maintainers and hackage trustees