BiobaseXNA: Efficient RNA/DNA representations

[ bioinformatics, bsd3, library, program ] [ Propose Tags ]

This is a base library for bioinformatics with emphasis on RNA and DNA primary structure as well as amino acid sequences.

Provided are efficient encodings for short sequences, as required by RNA folding tools. Extended RNA secondary structures can be represented as well.

Contains data from:

Frequency and isostericity of RNA base pairs
Jesse Stombaugh, Craig L. Zirbel, Eric Westhof, and Neocles B. Leontis
Nucl. Acids Res. (2009)

http://dx.crossref.org/10.1093%2Fnar%2Fgkp011

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Versions [RSS] 0.5.0.0, 0.5.0.1, 0.5.1.0, 0.5.2.0, 0.5.3.0, 0.5.4.0, 0.5.5.0, 0.5.6.0, 0.6.0.0, 0.6.2.0, 0.6.2.1, 0.6.2.2, 0.6.2.3, 0.6.2.4, 0.6.2.5, 0.6.3.0, 0.6.3.1, 0.7.0.0, 0.7.0.1, 0.7.0.2, 0.8.1.0, 0.8.1.1, 0.8.2.0, 0.8.3.0, 0.9.1.0, 0.9.1.1, 0.9.2.0, 0.9.2.1, 0.9.3.0, 0.9.3.1, 0.10.0.0, 0.11.0.0, 0.11.1.0, 0.11.1.1 (info)
Change log changelog
Dependencies base (>3 && <5), bytestring (>=0.10), cmdargs (>=0.10), containers (>=0.4), csv (>=0.1.2), file-embed (>=0.0.4.7), primitive (>=0.5), PrimitiveArray (>=0.5.3), repa (>=3.2), text (>=0.11), tuple (>=0.2), vector (>=0.10) [details]
License GPL-3.0-only
Copyright Christian Hoener zu Siederdissen, 2011-2013
Author Christian Hoener zu Siederdissen
Maintainer choener@tbi.univie.ac.at
Category Bioinformatics
Home page http://www.tbi.univie.ac.at/~choener/
Source repo head: git clone git://github.com/choener/BiobaseXNA
Uploaded by ChristianHoener at 2014-02-03T21:22:36Z
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Reverse Dependencies 17 direct, 2 indirect [details]
Executables SubOptDistance
Downloads 30855 total (48 in the last 30 days)
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Status Docs available [build log]
Successful builds reported [all 1 reports]